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	|- bgcolor="#C0FFC0"		|- bgcolor="#C0FFC0"
	![[#vanad|vanad]]		![[#vanad|vanad]]
-	|align="right"|2010 - 2012	+	|align="right"|2010 - 2013
	|align="right"|		|align="right"|
	|align="right"|3 - 8		|align="right"|3 - 8
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	|- bgcolor="#C0FFC0"		|- bgcolor="#C0FFC0"
	![[#oxygen|oxygen]]		![[#oxygen|oxygen]]
-	|align="right"|2010 - 2012	+	|align="right"|2010 - 2013
	|align="right"|		|align="right"|
-	|align="right"|1.5 - 2	+	|align="right"|1 - 2
	|align="right"|850		|align="right"|850
	|align="center"|single-node parallel calculations		|align="center"|single-node parallel calculations
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	|- bgcolor="#C0FFC0"		|- bgcolor="#C0FFC0"
	![[#gallium|gallium]]		![[#gallium|gallium]]
-	|align="right"|2011	+	|align="right"|2011 - 2013
	|align="right"|		|align="right"|
	|align="right"|2		|align="right"|2
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	|- bgcolor="#C0FFC0"		|- bgcolor="#C0FFC0"
	![[#magnesium|magnesium]]		![[#magnesium|magnesium]]
-	|align="right"|2011 - 2012	+	|align="right"|2011 - 2013
	|align="right"|		|align="right"|
	|align="right"|1 - 8		|align="right"|1 - 8
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	|restricted		|restricted
	|Pavel Jungwirth		|Pavel Jungwirth
		+	|- bgcolor="#C0FFC0"
		+	![[#platinum|platinum]]
		+	|align="right"|2016
		+	|align="right"|
		+	|align="right"|2 - 6
		+	|align="right"|1000 - 5400
		+	|align="center"|general use, parallel calculations, CUDA
		+	|restricted
		+	|Pavel Hobza
	|-		|-
	|}		|}
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	==vanad==		==vanad==
-	*Total nodes: 21	+	*Total nodes: 23
-	*Total cores: 164	+	*Total cores: 188
	*Parallel calculations: yes, within a single node, MPI		*Parallel calculations: yes, within a single node, MPI
	*Queuing system: SGE		*Queuing system: SGE
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	|align="right"|7.8 GB		|align="right"|7.8 GB
	|align="right"|950 GB		|align="right"|950 GB
		+	|-
		+	|v22 - v23
		+	|align="right"|2
		+	|vq-12
		+	|Intel Xeon E5-2640 2.50GHz
		+	|align="right"|12
		+	|align="right"|5.2 GB
		+	|align="right"|1900 GB
	|}		|}
	<br>		<br>
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	==oxygen==		==oxygen==
-	*Total nodes: 7	+	*Total nodes: 13
-	*Total cores: 256	+	*Total cores: 640
	*Parallel calculations: yes, within a single node, MPI		*Parallel calculations: yes, within a single node, MPI
	*Queuing system: SGE		*Queuing system: SGE
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	|align="right"|32		|align="right"|32
	|align="right"|2 GB		|align="right"|2 GB
		+	|align="right"|850 GB
		+	|-
		+	|o08 - o13
		+	|align="right"|6
		+	|oq-64
		+	|AMD Opteron 6272
		+	|align="right"|64
		+	|align="right"|1 GB
	|align="right"|850 GB		|align="right"|850 GB
	|}		|}
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	==gallium==		==gallium==
-	*Total nodes: 44	+	*Total nodes: 60
-	*Total cores: 440	+	*Total cores: 632
	*Parallel calculations: yes, within a single node, MPI		*Parallel calculations: yes, within a single node, MPI
	*Queuing system: SGE		*Queuing system: SGE
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	|align="right"|900 GB		|align="right"|900 GB
	|-		|-
-	|g23 - g44	+	|g23 - g60
-	|align="right"|22	+	|align="right"|38
	|gq-12-2		|gq-12-2
	|Intel Xeon E5645 2.40GHz		|Intel Xeon E5645 2.40GHz
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	|align="right"|2.8 GB		|align="right"|2.8 GB
	|align="right"|900 GB		|align="right"|900 GB
-	|2x nVidia Tesla M2090 (2x512 CUDA cores)	+	|2x nVidia Tesla M2090 (2x512 cores)
	|-		|-
	|m03 - m04		|m03 - m04
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	|align="right"|2.8 GB		|align="right"|2.8 GB
	|align="right"|900 GB		|align="right"|900 GB
-	|2x nVidia Tesla M2090 (2x512 CUDA cores)	+	|2x nVidia Tesla M2090 (2x512 cores)
		+	|-
		+	|(m37 - m40)
		+	|align="right"|4
		+	|mq-8-3-test
		+	|Intel Xeon CPU E5620 2.40GHz
		+	|align="right"|8
		+	|align="right"|5.8 GB
		+	|align="right"|1800 GB
		+	|2x nVidia Tesla M2090 (2x512 cores)
		+	|-
		+	|m41 - m46
		+	|align="right"|6
		+	|mq-12-2-cuda-k20
		+	|Intel Xeon CPU E5-2640 2.50GHz
		+	|align="right"|12
		+	|align="right"|1.8 GB
		+	|align="right"|900 GB
		+	|2x nVidia Tesla K20m (2x2496 cores)
		+	|}
		+	<br>
		+
		+	==platinum==
		+
		+	*Total nodes: 20
		+	*Total cores: 256
		+	*Parallel calculations: yes, within a single node, MPI, CUDA
		+	*Queuing system: SGE
		+	<br>
		+
		+	{| border="1" cellpadding="6" cellspacing="0"
		+	|-
		+	!Nodes
		+	!align="right"|# of nodes
		+	!Queue
		+	!CPU
		+	!align="right"|Cores/node
		+	!align="right"|Available RAM/core
		+	!align="right"|Scratch/node
		+	!Note
		+	|-
		+	|p01 - p04
		+	|align="right"|4
		+	|pq-cuda
		+	|Intel Xeon CPU E5620 2.40GHz
		+	|align="right"|8
		+	|align="right"|5.8 GB
		+	|align="right"|1800 GB
		+	|2x nVidia Tesla M2090 (2x512 cores)
		+	|-
		+	|p05 - p12
		+	|align="right"|8
		+	|pq-16-6
		+	|Intel Xeon CPU E5-2630 v3 2.40GHz
		+	|align="right"|16
		+	|align="right"|5.8 GB
		+	|align="right"|5400 GB
		+	|
		+	|-
		+	|p13 - p20
		+	|align="right"|8
		+	|pq-12-2
		+	|Intel Xeon CPU E5-2620 v3 2.40GHz
		+	|align="right"|12
		+	|align="right"|2.6 GB
		+	|align="right"|900 GB
		+	|
	|}		|}
	<br>		<br>
Line 1,077:		Line 1,168:
	!Total disk space		!Total disk space
	|-		|-
-	|align="right"|457	+	|align="right"|501
-	|align="right"|803	+	|align="right"|904
-	|align="right"|3168	+	|align="right"|4056
-	|align="right"|(8.9 TB)	+	|align="right"|(11.7 TB)
-	|align="right"|(992 disks / 596 TB)	+	|align="right"|(800 disks / 700 TB)
	|}		|}
	<br>		<br>
	[[Category:Clusters]]		[[Category:Clusters]]

---

Latest revision as of 09:51, 15 June 2016

Contents 1 Overview 1.1 Description 1.2 Cluster survey 2 Clusters 2.1 radon 2.2 iridium 2.3 helium 2.4 francium 2.5 lithium 2.6 uranium 2.7 barium 2.8 thallium 2.9 neon 2.10 erbium 2.11 sodium 2.12 vanad 2.13 zinc 2.14 oxygen 2.15 gallium 2.16 magnesium 2.17 platinum 3 Closed 3.1 cobalt 3.2 palladium 3.3 argon 3.4 krypton 4 Totals

Overview

Description

Depending on the hardware equipment and the age of a cluster there is always a set of typical applications that fit the cluster capabilities. The idea is to run any calculation on a cluster that just fits the job requirements; running it on less capable cluster would slow down the calculation or prevent running it at all, starting a low-demanding job on highly equippped cluster would waste the resources and prevent running jobs that require such equipment.

Cluster survey

Name	Year of construction	Year of destruction	Memory size [GB] / core	Disk (scratch) size [GB]	Usage	Access	Owner/manager*
cobalt	2003	2010	1	120	simple calculations, student tests, teaching	public
argon	2005	2011	2	160	single-processor calculations with lower requirements	public
krypton	2005	2011	1 - 2	160	single-processor calculations with lower requirements	public
radon	2005		2 - 4	320	single-processor calculations with average requirements	public
palladium	2004 - 2005	2010	3 - 6	240 - 600	memory and/or disk space demanding calculations	public
iridium	2006 - 2008		2	320 - 1000	general use	restricted	Petr Nachtigall Ota Bludsky
helium	2006 - 2008		2	250 - 320	parallel molecular dynamics calculations	restricted	Pavel Jungwirth
francium	2007		4	640	parallel molecular dynamics calculations with infiniband	restricted	Pavel Jungwirth
lithium	2006 - 2008		4 - 16	1600 - 6000	highly demanding parallel and/or single-processor calculations with large memory and disk space requirements	restricted	Pavel Hobza
uranium	2008		2	1500	general use	public
barium	2007 - 2009		1 - 2	320 - 1500	mostly parallel molecular dynamics calculations	restricted	Pavel Hobza
thallium	2007 - 2008		1 - 2	1500	general use	restricted	Pavel Hobza
neon	2009		2	900	parallel molecular dynamics calculations with infiniband	restricted	Pavel Hobza
erbium	2009 - 2010		2 - 6	900 - 3800	general use, parallel calculations	restricted	Martin Kabelac
sodium	2009 - 2010		1.5	850	general use, parallel calculations	restricted	Pavel Jungwirth
vanad	2010 - 2013		3 - 8	450 - 950	general use, parallel calculations	restricted	Ota Bludsky
zinc	2010 - 2012		3 - 20	1800 - 17000	general use, parallel calculations node z55 with large memory and disk	restricted	Pavel Hobza
oxygen	2010 - 2013		1 - 2	850	single-node parallel calculations	restricted	Pavel Jungwirth
gallium	2011 - 2013		2	900	general use, parallel calculations	restricted	Pavel Hobza
magnesium	2011 - 2013		1 - 8	900 - 3600	general use, parallel calculations, CUDA	restricted	Pavel Jungwirth
platinum	2016		2 - 6	1000 - 5400	general use, parallel calculations, CUDA	restricted	Pavel Hobza

^*Please contact this person when requiring an account on a restricted-access cluster.

Clusters

The following text provides detailed information about clusters and nodes. Tables show resources available for calculations, which are usually smaller than total resources mentioned in the general overview above; some of the total node memory (RAM) must always remain reserved for operating system tasks.

radon

• Total nodes: 46
• Total cores: 46
• Parallel calculations: no
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
r01 - r24	24	rq4	AMD Athlon 64 3500+	1	3.6 GB	320 GB
r25 - r46	22	rq2	AMD Athlon 64 3500+	1	1.6 GB	320 GB

iridium

• Total nodes: 50
• Total cores: 120
• Parallel calculations: yes, special setup
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
i01 - i34	34	<unknown>	Intel Core2 6600 2.40GHz	2	1.6 GB	320 GB
i35 - i40	6	<unknown>	Intel Core2 Duo E6750 2.66GHz	2	1.6 GB	320 GB
i41 - i42	2	<unknown>	Intel Core2 Quad Q6600 2.40GHz	4	1.8 GB	1000 GB
i43 - i50	8	<unknown>	Intel Core2 Quad Q9550 2.83GHz	4	1.8 GB	1000 GB

helium

• Total nodes: 16
• Total cores: 64
• Parallel calculations: yes, accross nodes, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
h01 - h06	6	hq	AMD Opteron Dual Core 275	4	1.8 GB	320 GB
h07 - h16	10	hq	AMD Opteron Dual Core 2216	4	1.8 GB	250 GB

francium

• Total nodes: 24
• Total cores: 96
• Parallel calculations: yes, accross nodes, MPI, infiniband
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
f01 - f24	24	fq	AMD Opteron Dual Core 2214	4	3.8 GB	640 GB

lithium

• Total nodes: 16
• Total cores: 82
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
l01 - l04	4	lq-4-8	AMD Opteron Dual Core 285	4	7.8 GB	3000 GB
l05 - l08	4	lq-2-16	AMD Opteron 256	2	15.4 GB	3000 GB
l09	1	lq-2-16	AMD Opteron 854	2	15.4 GB	1600 GB
l10 - l16	7	lq-8-4	Intel Xeon E5430 2.66GHz	8	3.8 GB	6000 GB

uranium

• Total nodes: 24
• Total cores: 192
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
u01 - u14	14	columbusq	Intel Xeon E5430 2.66GHz	8	1.8 GB	1500 GB
u15 - u24	10	uq	Intel Xeon E5430 2.66GHz	8	1.8 GB	1500 GB

barium

• Total nodes: 28
• Total cores: 204
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
b01 - b02	2	bq-4-1	Intel Core2 Quad 2.40GHz	4	0.8 GB	320 GB
b03 - b05	3	bq-4-2	Intel Core2 Quad 2.40GHz	4	1.8 GB	320 GB
b06 - b14	9	bq-8-2	Intel Xeon E5345 2.33GHz	8	1.8 GB	1320 GB
b15 - b19	5	bq-8-2	Intel Xeon E5430 2.66GHz	8	1.8 GB	1500 GB
b20 - b24	5	bq-8-2-f	Intel Xeon E5430 2.66GHz	8	1.8 GB	1500 GB
b25 - b28	4	bq-8-1	Intel Xeon E5520 2.27GHz	8	0.8 GB	1500 GB

thallium

• Total nodes: 19
• Total cores: 124
• Parallel calculations: yes, accross multiple nodes, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
t01 - t07	7	tq-4-2	Intel Core2 Quad 2.40GHz	4	1.8 GB	1500 GB
t08 - t14	7	tq-8-1	Intel Xeon E5345 2.33GHz	8	0.8 GB	1500 GB
t15 - t19	5	tq-4-2	Intel Xeon E5430 2.66GHz	8	0.8 GB	1500 GB

neon

• Total nodes: 24
• Total cores: 192
• Parallel calculations: yes, accross nodes, MPI, infiniband
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
n01 - n24	24	nq	Intel Xeon E5430 2.66GHz	8	1.8 GB	900 GB

erbium

• Total nodes: 7
• Total cores: 26
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
e01	1	eq-6-4	Intel Core i7 970 @ 3.2 GHz	6	3.8 GB	3600 GB
e02 - e03	2	eq-4-2	Intel Core2 Extreme X9650 3.00GHz	4	1.8 GB	900 GB
e04	1	eq-4-2	Intel Core2 Quad Q6600 2.40GHz	4	1.8 GB	900 GB
e05 - e07	3	eq-4-4	Intel Core2 Quad Q9650 3.00GHz	4	3.8 GB	1800 GB
e08 - e10	3	eq-4-6	Intel Core i7 950 @ 3.07 GHz	4	5.8 GB	3600 GB

sodium

• Total nodes: 46
• Total cores: 368
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
s01 - s24	24	sq	Intel Xeon E5530 2.40GHz	8	1.3 GB	850 GB
s25 - s46	22	sq	Intel Xeon E5620 2.40GHz	8	1.3 GB	850 GB

vanad

• Total nodes: 23
• Total cores: 188
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
v01 - v04	4	vq-8	Intel Xeon E5620 2.40GHz	8	2.8 GB	450 GB
v05 - v13	9	vq-4	Intel Xeon E5620 2.40GHz	4	2.8 GB	450 GB
v14 - v21	8	vq-12	Intel Xeon E5645 2.40GHz	12	7.8 GB	950 GB
v22 - v23	2	vq-12	Intel Xeon E5-2640 2.50GHz	12	5.2 GB	1900 GB

zinc

• Total nodes: 56
• Total cores: 480
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
z01 - z26	26	zq-8-3	Intel Xeon E5620 2.40GHz	8	2.8 GB	1800 GB
z27 - z36	10	zq-8-6-large	Intel Xeon E5620 2.40GHz	8	5.8 GB	5400 GB
z37 - z54	18	zq-8-6	Intel Xeon E5630 2.53GHz	8	5.8 GB	3600 GB
z55-z56	2	zq-24-20	Intel Xeon E7-4807 1.87GHz	24	21 GB	17000 GB

oxygen

• Total nodes: 13
• Total cores: 640
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
o01 - o02	2	oq-32	AMD Opteron 6134	32	2 GB	850 GB
o03 - o04	2	oq-48	AMD Opteron 6172	48	1.5 GB	850 GB
o05 - o07	3	oq-32	AMD Opteron 6134	32	2 GB	850 GB
o08 - o13	6	oq-64	AMD Opteron 6272	64	1 GB	850 GB

gallium

• Total nodes: 60
• Total cores: 632
• Parallel calculations: yes, within a single node, MPI
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
g01 - g22	22	gq-8-2	Intel Xeon E5630 2.53GHz	8	1.8 GB	900 GB
g23 - g60	38	gq-12-2	Intel Xeon E5645 2.40GHz	12	1.8 GB	900 GB

magnesium

• Total nodes: 36
• Total cores: 408
• Parallel calculations: yes, within a single node, MPI, CUDA
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node	Note
m01 - m02	2	mq-8-3-cuda	Intel Xeon CPU E5640 2.67GHz	8	2.8 GB	900 GB	2x nVidia Tesla M2090 (2x512 cores)
m03 - m04	2	mq-8-8	Intel Xeon CPU X5647 2.93GHz	8	7.8 GB	3600 GB
m05 - m34	30	mq-12-1	Intel Xeon CPU E5645 2.40GHz	12	1.2 GB	900 GB
m35 - m36	2	mq-8-3-cuda	Intel Xeon CPU X5647 2.93GHz	8	2.8 GB	900 GB	2x nVidia Tesla M2090 (2x512 cores)
(m37 - m40)	4	mq-8-3-test	Intel Xeon CPU E5620 2.40GHz	8	5.8 GB	1800 GB	2x nVidia Tesla M2090 (2x512 cores)
m41 - m46	6	mq-12-2-cuda-k20	Intel Xeon CPU E5-2640 2.50GHz	12	1.8 GB	900 GB	2x nVidia Tesla K20m (2x2496 cores)

platinum

• Total nodes: 20
• Total cores: 256
• Parallel calculations: yes, within a single node, MPI, CUDA
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node	Note
p01 - p04	4	pq-cuda	Intel Xeon CPU E5620 2.40GHz	8	5.8 GB	1800 GB	2x nVidia Tesla M2090 (2x512 cores)
p05 - p12	8	pq-16-6	Intel Xeon CPU E5-2630 v3 2.40GHz	16	5.8 GB	5400 GB
p13 - p20	8	pq-12-2	Intel Xeon CPU E5-2620 v3 2.40GHz	12	2.6 GB	900 GB

Closed

The following clusters have been decomposed and annihilated.

cobalt

• Total nodes: 40
• Total cores: 40
• Parallel calculations: no
• Queuing system: DQS

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
c01 - c40	40	c01_a - c40_a	Intel Pentium 4 2.80GHz	1	800 MB	120 GB

palladium

• Total nodes: 24
• Total cores: 48
• Parallel calculations: yes, within a single node (in pqXp queues, max 2 processor per job)
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
p01 - p04	4	pqos	AMD Opteron 244	2	2.6 GB	240 GB
p05 - p14	10	pqop	AMD Opteron 244	2	2.6 GB	240 GB
p15 - p18	4	pqns	AMD Opteron 250	2	5.6 GB	600 GB
p19 - p24	6	pqnp	AMD Opteron 250	2	5.6 GB	600 GB

argon

• Total nodes: 44
• Total cores: 44
• Parallel calculations: no
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
a01 - a44	44	aq	Intel Pentium 4 3.40 GHz	1	1.8 GB	160 GB

krypton

• Total nodes: 44
• Total cores: 44
• Parallel calculations: no
• Queuing system: SGE

Nodes	# of nodes	Queue	CPU	Cores/node	Available RAM/core	Scratch/node
k01 - k16	16	kq2	Intel Pentium 4 3.40 GHz	1	1.8 GB	160 GB
k17 - k44	28	kq1	Intel Pentium 4 3.40 GHz	1	0.8 GB	160 GB

Totals

The total numbers only include counts from working clusters.

Total # of nodes	Total # of processors	Total # of cores	Total RAM	Total disk space
501	904	4056	(11.7 TB)	(800 disks / 700 TB)