Cluster list

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==iridium==
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==oxygen==
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==palladium==
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= Totals =
= Totals =

Revision as of 15:03, 11 March 2011

Contents

Overview

Description

Depending on the hardware equipment and the age of a cluster there is always a set of typical applications that fit the cluster capabilities. The idea is to run any calculation on a cluster that just fits the job requirements; running it on less capable cluster would slow down the calculation or prevent running it at all, starting a low-demanding job on highly equippped cluster would waste the resources and prevent running jobs that require such equipment.

Cluster survey

Name Year of construction Memory size [GB] / core Disk (scratch) size [GB] Usage Access Owner/manager*
cobalt 2003 1 120 simple calculations, student tests, teaching public
argon 2005 2 160 single-processor calculations with lower requirements public
krypton 2005 1 - 2 160 single-processor calculations with lower requirements public
radon 2005 2 - 4 320 single-processor calculations with average requirements public
palladium 2004 - 2005 3 - 6 240 - 600 older cluster for memory and/or disk space demanding calculations public
iridium 2006 - 2008 2 320 - 1000 general use restricted Petr Nachtigall
Ota Bludsky
helium 2006 - 2008 2 250 - 320 parallel molecular dynamics calculations restricted Pavel Jungwirth
francium 2007 4 640 parallel molecular dynamics calculations with infiniband restricted Pavel Jungwirth
lithium 2006 - 2008 4 - 16 1600 - 6000 highly demanding parallel and/or single-processor calculations with large memory and disk space requirements restricted Pavel Hobza
uranium 2008 2 1500 general use public
barium 2007 - 2009 1 - 2 320 - 1500 mostly parallel molecular dynamics calculations restricted Pavel Hobza
thallium 2007 - 2008 1 - 2 1500 general use restricted Pavel Hobza
neon 2009 2 900 parallel molecular dynamics calculations with infiniband restricted Pavel Hobza
erbium 2009 - 2010 2 - 6 900 - 3800 general use, parallel calculations restricted Martin Kabelac
sodium 2009 - 2010 1.5 850 general use, parallel calculations restricted Pavel Jungwirth
vanad 2010 3 450 general use, parallel calculations restricted Ota Bludsky
zinc 2010 3 1800 general use, parallel calculations restricted Pavel Hobza
oxygen 2010 1.5 - 2 850 single-node parallel calculations restricted Pavel Jungwirth


*Please contact this person when requiring an account on a restricted-access cluster.

Clusters

The following text provides detailed information about clusters and nodes. Tables show resources available for calculations, which are usually smaller than total resources mentioned in the general overview above; some of the total node memory (RAM) must always remain reserved for operating system tasks.

argon

  • Total nodes: 44
  • Total cores: 44
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
a01 - a44 44 aq Intel Pentium 4 3.40 GHz 1 1.8 GB 160 GB


krypton

  • Total nodes: 44
  • Total cores: 44
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
k01 - k16 16 kq2 Intel Pentium 4 3.40 GHz 1 1.8 GB 160 GB
k17 - k44 28 kq1 Intel Pentium 4 3.40 GHz 1 0.8 GB 160 GB


radon

  • Total nodes: 46
  • Total cores: 46
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
r01 - r24 24 rq4 AMD Athlon 64 3500+ 1 3.6 GB 320 GB
r25 - r46 22 rq2 AMD Athlon 64 3500+ 1 1.6 GB 320 GB


iridium

  • Total nodes: 50
  • Total cores: 120
  • Parallel calculations: yes, special setup
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
i01 - i34 34 <unknown> Intel Core2 6600 2.40GHz 2 1.6 GB 320 GB
i35 - i40 6 <unknown> Intel Core2 Duo E6750 2.66GHz 2 1.6 GB 320 GB
i41 - i42 2 <unknown> Intel Core2 Quad Q6600 2.40GHz 4 1.8 GB 1000 GB
i43 - i50 8 <unknown> Intel Core2 Quad Q9550 2.83GHz 4 1.8 GB 1000 GB


helium

  • Total nodes: 16
  • Total cores: 64
  • Parallel calculations: yes, accross nodes, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
h01 - h06 6 hq AMD Opteron Dual Core 275 4 1.8 GB 320 GB
h07 - h16 10 hq AMD Opteron Dual Core 2216 4 1.8 GB 250 GB


francium

  • Total nodes: 24
  • Total cores: 96
  • Parallel calculations: yes, accross nodes, MPI, infiniband
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
f01 - f24 24 fq AMD Opteron Dual Core 2214 4 3.8 GB 640 GB


lithium

  • Total nodes: 16
  • Total cores: 82
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
l01 - l04 4 lq-4-8 AMD Opteron Dual Core 285 4 7.8 GB 3000 GB
l05 - l08 4 lq-2-16 AMD Opteron 256 2 15.4 GB 3000 GB
l09 1 lq-2-16 AMD Opteron 854 2 15.4 GB 1600 GB
l10 - l16 7 lq-8-4 Intel Xeon E5430 2.66GHz 8 3.8 GB 6000 GB


uranium

  • Total nodes: 24
  • Total cores: 192
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
u01 - u14 14 columbusq Intel Xeon E5430 2.66GHz 8 1.8 GB 1500 GB
u15 - u24 10 uq Intel Xeon E5430 2.66GHz 8 1.8 GB 1500 GB


barium

  • Total nodes: 28
  • Total cores: 204
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
b01 - b02 2 bq-4-1 Intel Core2 Quad 2.40GHz 4 0.8 GB 320 GB
b03 - b05 3 bq-4-2 Intel Core2 Quad 2.40GHz 4 1.8 GB 320 GB
b06 - b14 9 bq-8-2 Intel Xeon E5345 2.33GHz 8 1.8 GB 1320 GB
b15 - b19 5 bq-8-2 Intel Xeon E5430 2.66GHz 8 1.8 GB 1500 GB
b20 - b24 5 bq-8-2-f Intel Xeon E5430 2.66GHz 8 1.8 GB 1500 GB
b25 - b28 4 bq-8-1 Intel Xeon E5520 2.27GHz 8 0.8 GB 1500 GB


thallium

  • Total nodes: 19
  • Total cores: 124
  • Parallel calculations: yes, accross multiple nodes, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
t01 - t07 7 tq-4-2 Intel Core2 Quad 2.40GHz 4 1.8 GB 1500 GB
t08 - t14 7 tq-8-1 Intel Xeon E5345 2.33GHz 8 0.8 GB 1500 GB
t15 - t19 5 tq-4-2 Intel Xeon E5430 2.66GHz 8 0.8 GB 1500 GB


neon

  • Total nodes: 24
  • Total cores: 192
  • Parallel calculations: yes, accross nodes, MPI, infiniband
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
n01 - n24 24 nq Intel Xeon E5430 2.66GHz 8 1.8 GB 900 GB


erbium

  • Total nodes: 7
  • Total cores: 26
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
e01 1 eq-6-4 Intel Core i7 970 @ 3.2 GHz 6 3.8 GB 3600 GB
e02 - e03 2 eq-4-2 Intel Core2 Extreme X9650 3.00GHz 4 1.8 GB 900 GB
e04 1 eq-4-2 Intel Core2 Quad Q6600 2.40GHz 4 1.8 GB 900 GB
e05 - e07 3 eq-4-4 Intel Core2 Quad Q9650 3.00GHz 4 3.8 GB 1800 GB
e08 - e10 3 eq-4-6 Intel Core i7 950 @ 3.07 GHz 4 5.8 GB 3600 GB


sodium

  • Total nodes: 46
  • Total cores: 368
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
s01 - s24 24 sq Intel Xeon E5530 2.40GHz 8 1.3 GB 850 GB
s25 - s46 22 sq Intel Xeon E5620 2.40GHz 8 1.3 GB 850 GB


vanad

  • Total nodes: 6
  • Total cores: 40
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
v01 - v04 4 sq Intel Xeon E5620 2.40GHz 8 2.8 GB 450 GB
v05 - v06 2 sq Intel Xeon E5620 2.40GHz 4 2.8 GB 450 GB


zinc

  • Total nodes: 36
  • Total cores: 288
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
z01 - z36 36 zq Intel Xeon E5620 2.40GHz 8 2.8 GB 1800 GB

oxygen

  • Total nodes: 4
  • Total cores: 160
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
o01 - o02 2 oq-32 AMD Opteron 6134 32 2 GB 850 GB
o03 - o04 2 oq-48 AMD Opteron 6172 48 1.5 GB 850 GB


Closed

The following clusters have been decomposed and annihilated.

cobalt

  • Total nodes: 40
  • Total cores: 40
  • Parallel calculations: no
  • Queuing system: DQS


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
c01 - c40 40 c01_a - c40_a Intel Pentium 4 2.80GHz 1 800 MB 120 GB


palladium

  • Total nodes: 24
  • Total cores: 48
  • Parallel calculations: yes, within a single node (in pqXp queues, max 2 processor per job)
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
p01 - p04 4 pqos AMD Opteron 244 2 2.6 GB 240 GB
p05 - p14 10 pqop AMD Opteron 244 2 2.6 GB 240 GB
p15 - p18 4 pqns AMD Opteron 250 2 5.6 GB 600 GB
p19 - p24 6 pqnp AMD Opteron 250 2 5.6 GB 600 GB


Totals

The total numbers only include counts from working clusters.

Total # of nodes Total # of cores Total RAM Total disk space
506 2202 (5.0 TB) (412 TB)


Retrieved from "http://centrum.uochb.cas.cz/mediawiki/index.php/Cluster_list"
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