Cluster list

From Molecular Modeling Wiki

(Difference between revisions)
Jump to: navigation, search
(→francium)
(→Clusters)
Line 136: Line 136:
|}
|}
-
 
+
<br>
==argon==
==argon==
Line 164: Line 164:
|}
|}
-
 
+
<br>
==krypton==
==krypton==
Line 200: Line 200:
|}
|}
-
 
+
<br>
==radon==
==radon==
Line 236: Line 236:
|}
|}
-
 
+
<br>
==palladium==
==palladium==
Line 252: Line 252:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 288: Line 288:
|}
|}
-
 
+
<br>
==iridium==
==iridium==
Line 304: Line 304:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 340: Line 340:
|}
|}
-
 
+
<br>
==helium==
==helium==
Line 356: Line 356:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 376: Line 376:
|}
|}
-
 
+
<br>
==francium==
==francium==
Line 392: Line 392:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 407: Line 407:
==lithium==
==lithium==
-
*Total nodes:
+
*Total nodes: 16
-
*Total cores:
+
*Total cores: 82
-
*Parallel calculations: no
+
*Parallel calculations: yes, within a single node, MPI
*Queuing system: SGE
*Queuing system: SGE
Line 420: Line 420:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
-
|
+
|l01 - l04
-
|
+
|4
-
|
+
|lq-4-8
-
|
+
|AMD Opteron Dual Core 285
-
|
+
|4
-
|
+
|7.8 GB
-
|
+
|3000 GB
 +
|-
 +
|l05 - l08
 +
|4
 +
|lq-2-16
 +
|AMD Opteron 256
 +
|2
 +
|15.4 GB
 +
|3000 GB
 +
|-
 +
|l09
 +
|1
 +
|lq-2-16
 +
|AMD Opteron 854
 +
|2
 +
|15.4 GB
 +
|1600 GB
 +
|-
 +
|l10 - l16
 +
|7
 +
|lq-8-4
 +
|Intel Xeon E5430 2.66GHz
 +
|8
 +
|3.8 GB
 +
|6000 GB
|}
|}
 +
<br>
==uranium==
==uranium==
Line 447: Line 472:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 459: Line 484:
|}
|}
-
 
+
<br>
==barium==
==barium==
Line 475: Line 500:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-
Line 487: Line 512:
|}
|}
-
 
+
<br>
==thallium==
==thallium==
Line 503: Line 528:
!CPU
!CPU
!Cores/node
!Cores/node
-
!RAM/core
+
!Available RAM/core
!Scratch/node
!Scratch/node
|-
|-

Revision as of 13:51, 16 March 2009

Contents

Overview

General description

Depending on the hardware equipment and the age of a cluster there is always a set of typical applications that fit the cluster capabilities. The idea is to run any calculation on a cluster that just fits the job requirements; running it on less capable cluster would slow down the calculation or prevent running it at all, starting a low-demanding job on highly equippped cluster would waste the resources and prevent running jobs that require such equipment.

Cluster survey

Name Year of construction Memory size [GB] / core Disk (scratch) size [GB] Usage Access
cobalt (?) 2003 1 120 simple calculations, student tests, teaching public
argon 2005 2 160 single-processor calculations with lower requirements public
krypton 2005 1 - 2 160 single-processor calculations with lower requirements public
radon 2005 2 - 4 320 single-processor calculations with average requirements public
palladium 2004 - 2005 3 - 6 240 - 600 older cluster for memory and/or disk space demanding calculations public
iridium 2006 - 2008 2 320 - 1000 general use restricted
helium 2006 - 2008 2 250 - 320 parallel molecular dynamics calculations restricted
francium 2007 4 640 parallel molecular dynamics calculations with infiniband restricted
lithium 2006 - 2008 4 - 16 1600 - 6000 highly demanding parallel and/or single-processor calculations with large memory and disk space requirements restricted
uranium 2008 2 1500 general use public
barium 2007 - 2008 1 - 2 320 - 1500 mostly parallel molecular dynamics calculations restricted
thallium 2007 - 2008 1 - 2 1500 general use restricted


Clusters

The following text provides detailed information about clusters and nodes. Tables show resources available for calculations, which are usually smaller than total resources mentioned in the general overview above; some of the total node memory (RAM) must always remain reserved for operating system tasks.

cobalt

  • Total nodes: 40
  • Total cores: 40
  • Parallel calculations: no
  • Queuing system: DQS


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
c01 - c40 40 c01_a - c40_a Intel Pentium 4 2.80GHz 1 800 MB 120 GB


argon

  • Total nodes: 44
  • Total cores: 44
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
a01 - a44 44 aq Intel Pentium 4 3.40 GHz 1 1.8 GB 160 GB


krypton

  • Total nodes: 44
  • Total cores: 44
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
k01 - k16 16 kq2 Intel Pentium 4 3.40 GHz 1 1.8 GB 160 GB
k17 - k44 16 kq1 Intel Pentium 4 3.40 GHz 1 0.8 GB 160 GB


radon

  • Total nodes: 46
  • Total cores: 46
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
r01 - r24 24 rq4 AMD Athlon 64 3500+ 1 3.6 GB 320 GB
r25 - r46 22 rq2 AMD Athlon 64 3500+ 1 1.6 GB 320 GB


palladium

  • Total nodes: 14
  • Total cores: 10
  • Parallel calculations: yes, within a single node (in pqXp queues, max 2 processor per job)
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
p01 - p04 4 pqos AMD Opteron 244 2 2.6 GB 240 GB
p05 - p14 10 pqop AMD Opteron 244 2 2.6 GB 240 GB
p15 - p18 4 pqns AMD Opteron 250 2 5.6 GB 600 GB
p19 - p24 6 pqnp AMD Opteron 250 2 5.6 GB 600 GB


iridium

  • Total nodes: 50
  • Total cores: 120
  • Parallel calculations: yes, special setup
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
i01 - i34 34 <unknown> Intel Core2 6600 2.40GHz 2 1.6 GB 320 GB
i35 - i40 6 <unknown> Intel Core2 Duo E6750 2.66GHz 2 1.6 GB 320 GB
i41 - i42 2 <unknown> Intel Core2 Quad Q6600 2.40GHz 4 1.8 GB 1000 GB
i43 - i50 8 <unknown> Intel Core2 Quad Q9550 2.83GHz 4 1.8 GB 1000 GB


helium

  • Total nodes: 16
  • Total cores: 64
  • Parallel calculations: yes, accross nodes, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
h01 - h06 6 hq AMD Opteron Dual Core 275 4 1.8 GB 320 GB
h07 - h16 10 hq AMD Opteron Dual Core 2216 4 1.8 GB 250 GB


francium

  • Total nodes: 24
  • Total cores: 96
  • Parallel calculations: yes, accross nodes, MPI, infiniband
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
f01 - f24 24 fq AMD Opteron Dual Core 2214 4 3.8 GB 640 GB


lithium

  • Total nodes: 16
  • Total cores: 82
  • Parallel calculations: yes, within a single node, MPI
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
l01 - l04 4 lq-4-8 AMD Opteron Dual Core 285 4 7.8 GB 3000 GB
l05 - l08 4 lq-2-16 AMD Opteron 256 2 15.4 GB 3000 GB
l09 1 lq-2-16 AMD Opteron 854 2 15.4 GB 1600 GB
l10 - l16 7 lq-8-4 Intel Xeon E5430 2.66GHz 8 3.8 GB 6000 GB


uranium

  • Total nodes:
  • Total cores:
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node


barium

  • Total nodes:
  • Total cores:
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node


thallium

  • Total nodes:
  • Total cores:
  • Parallel calculations: no
  • Queuing system: SGE


Nodes # of nodes Queue CPU Cores/node Available RAM/core Scratch/node
Retrieved from "http://centrum.uochb.cas.cz/mediawiki/index.php/Cluster_list"
Personal tools